Variant report

Variant	rs72672762
Chromosome Location	chr4:96130516-96130517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96126045..96127650-chr4:96129190..96131527,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17023231	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2114531	0.90[AFR][1000 genomes]
rs2114532	0.85[AFR][1000 genomes]
rs2162448	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72672769	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72672772	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7653969	0.86[EUR][1000 genomes]
rs7674527	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv879623	chr4:96123466-96168719	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96100000-96143000	Weak transcription	Fetal Kidney	kidney
2	chr4:96110600-96133800	Weak transcription	Gastric	stomach
3	chr4:96110600-96134000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:96115400-96134000	Weak transcription	Aorta	Aorta
5	chr4:96115800-96132800	Weak transcription	Right Ventricle	heart
6	chr4:96123000-96131400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:96124200-96131000	Weak transcription	Lung	lung
8	chr4:96124200-96133800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:96124200-96135400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:96124200-96135400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr4:96124400-96132000	Weak transcription	Osteobl	bone
12	chr4:96125000-96133800	Weak transcription	Fetal Stomach	stomach
13	chr4:96125600-96131000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:96125800-96132200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr4:96126000-96131200	Weak transcription	Brain Germinal Matrix	brain
16	chr4:96126000-96133600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr4:96126000-96134600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:96126000-96134600	Weak transcription	Fetal Lung	lung
19	chr4:96126000-96137000	Weak transcription	Ovary	ovary
20	chr4:96126400-96133600	Weak transcription	Brain Anterior Caudate	brain
21	chr4:96126400-96133800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:96126600-96132000	Weak transcription	Brain Hippocampus Middle	brain
23	chr4:96126600-96133800	Weak transcription	Brain Angular Gyrus	brain
24	chr4:96128000-96130600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr4:96128000-96133800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr4:96128400-96130800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:96130000-96131400	Strong transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links