Variant report

Variant	rs72672772
Chromosome Location	chr4:96140606-96140607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2162448	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72672762	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72672769	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7653969	0.97[EUR][1000 genomes]
rs7674527	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv594907	chr4:95975470-96170439	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv879623	chr4:96123466-96168719	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96100000-96143000	Weak transcription	Fetal Kidney	kidney
2	chr4:96134400-96142600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:96134600-96176800	Weak transcription	Fetal Stomach	stomach
4	chr4:96134800-96147000	Weak transcription	Brain Anterior Caudate	brain
5	chr4:96135200-96146800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr4:96135600-96153600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:96136800-96140800	Strong transcription	Brain Hippocampus Middle	brain
8	chr4:96136800-96141200	Weak transcription	Brain Substantia Nigra	brain
9	chr4:96137200-96145000	Weak transcription	Fetal Brain Male	brain
10	chr4:96137600-96143000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:96138000-96141000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:96138200-96147800	Weak transcription	Ovary	ovary
13	chr4:96138600-96142000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr4:96139400-96141400	Strong transcription	Fetal Lung	lung
15	chr4:96139400-96141600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:96140000-96140800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:96140000-96140800	Strong transcription	Brain Angular Gyrus	brain
18	chr4:96140000-96141000	Enhancers	HSMM	muscle
19	chr4:96140000-96141200	Enhancers	NH-A	brain
20	chr4:96140000-96141200	Enhancers	Osteobl	bone
21	chr4:96140200-96140800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr4:96140200-96140800	Enhancers	HSMMtube	muscle
23	chr4:96140400-96141000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr4:96140400-96141200	Active TSS	Rectal Mucosa Donor 31	rectum
25	chr4:96140600-96140800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:96140600-96141000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr4:96140600-96141800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr4:96140600-96142200	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr4:96140600-96152600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr4:96140600-96163400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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