Variant report

Variant	rs72674488
Chromosome Location	chr1:76655935-76655936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55861931	1.00[EUR][1000 genomes]
rs55944362	1.00[EUR][1000 genomes]
rs72674428	1.00[EUR][1000 genomes]
rs72674456	1.00[EUR][1000 genomes]
rs72674473	1.00[EUR][1000 genomes]
rs72674478	1.00[EUR][1000 genomes]
rs72674479	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72674481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72674486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72674493	1.00[EUR][1000 genomes]
rs72674495	1.00[EUR][1000 genomes]
rs72674502	1.00[EUR][1000 genomes]
rs72675905	1.00[EUR][1000 genomes]
rs72675913	1.00[EUR][1000 genomes]
rs72675920	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76646600-76658000	Weak transcription	Fetal Stomach	stomach
2	chr1:76647000-76665600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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