Variant report

Variant	rs72675920
Chromosome Location	chr1:76675156-76675157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55861931	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55944362	1.00[EUR][1000 genomes]
rs72674428	1.00[EUR][1000 genomes]
rs72674456	1.00[EUR][1000 genomes]
rs72674473	1.00[EUR][1000 genomes]
rs72674478	1.00[EUR][1000 genomes]
rs72674479	1.00[EUR][1000 genomes]
rs72674481	1.00[EUR][1000 genomes]
rs72674486	1.00[EUR][1000 genomes]
rs72674488	1.00[EUR][1000 genomes]
rs72674493	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72674495	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72674500	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72674502	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72675905	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72675913	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72675923	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72675924	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1801297	chr1:76673530-76686142	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76674600-76676600	Enhancers	Primary T cells from cord blood	blood
2	chr1:76674600-76676800	Enhancers	Fetal Thymus	thymus
3	chr1:76674800-76676800	Enhancers	Thymus	Thymus
4	chr1:76675000-76675200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:76675000-76675200	ZNF genes & repeats	Aorta	Aorta
6	chr1:76675000-76676200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:76675000-76676200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:76675000-76676400	Enhancers	Primary B cells from peripheral blood	blood
9	chr1:76675000-76676400	Enhancers	Primary hematopoietic stem cells	blood
10	chr1:76675000-76676600	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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