Variant report

Variant	rs72678112
Chromosome Location	chr4:130953303-130953304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12499180	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28478344	0.90[EUR][1000 genomes]
rs55792571	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55792945	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6534757	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67901610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67960148	0.83[AFR][1000 genomes]
rs6840686	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019516	chr4:130754819-130976202	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1017270	chr4:130853337-130982586	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv879936	chr4:130941492-130981535	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130946600-130959600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:130947800-130954000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:130949000-130954200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr4:130950800-130959600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:130952000-130954800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:130952600-130953400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:130952600-130953600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:130952600-130965000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:130952800-130953800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:130952800-130954800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:130953000-130954600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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