Variant report

Variant	rs72682936
Chromosome Location	chr14:25379008-25379009
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55779991	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56091828	1.00[ASN][1000 genomes]
rs72682915	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1041445	chr14:25326692-25388290	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv901508	chr14:25365505-25451903	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25364800-25379800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:25370200-25379800	Weak transcription	Brain Hippocampus Middle	brain
3	chr14:25370200-25379800	Weak transcription	Colon Smooth Muscle	Colon
4	chr14:25370200-25380400	Weak transcription	Right Atrium	heart
5	chr14:25370200-25380600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr14:25370400-25380600	Weak transcription	Brain Angular Gyrus	brain
7	chr14:25370800-25380200	Weak transcription	Brain Anterior Caudate	brain
8	chr14:25372600-25380600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr14:25372600-25382400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr14:25373400-25380400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr14:25374000-25380400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr14:25376200-25380400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr14:25377000-25379800	Enhancers	Pancreas	Pancrea
14	chr14:25377000-25382000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr14:25377200-25379400	Enhancers	Adipose Nuclei	Adipose
16	chr14:25377200-25380600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:25377200-25381400	Enhancers	HepG2	liver
18	chr14:25377400-25380000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr14:25377600-25379200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr14:25378000-25379200	Weak transcription	Gastric	stomach
21	chr14:25378000-25380200	Weak transcription	Fetal Lung	lung
22	chr14:25378400-25379400	Enhancers	Right Ventricle	heart
23	chr14:25378400-25380000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr14:25378600-25379200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr14:25378600-25379200	Weak transcription	Left Ventricle	heart
26	chr14:25378600-25379400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr14:25378600-25380400	Weak transcription	Placenta	Placenta
28	chr14:25378800-25379600	Enhancers	Stomach Mucosa	stomach
29	chr14:25378800-25379800	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr14:25378800-25381200	Enhancers	Small Intestine	intestine
31	chr14:25378800-25381400	Enhancers	Fetal Intestine Small	intestine
32	chr14:25379000-25379800	Enhancers	Colonic Mucosa	Colon
33	chr14:25379000-25381400	Enhancers	Fetal Heart	heart

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