Variant report

Variant	rs56091828
Chromosome Location	chr14:25517198-25517199
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1952496	0.87[EUR][1000 genomes]
rs4617771	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55779991	1.00[ASN][1000 genomes]
rs55787005	0.86[EUR][1000 genomes]
rs61978850	0.86[EUR][1000 genomes]
rs72682915	1.00[ASN][1000 genomes]
rs72682936	1.00[ASN][1000 genomes]
rs768972	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv901510	chr14:25476170-25526309	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv901511	chr14:25505085-25588029	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv527684	chr14:25514126-25518326	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25492400-25517600	Weak transcription	Psoas Muscle	Psoas
2	chr14:25511000-25517400	Weak transcription	HSMMtube	muscle
3	chr14:25511800-25517400	Weak transcription	Fetal Brain Male	brain
4	chr14:25512200-25517200	Weak transcription	Adipose Nuclei	Adipose
5	chr14:25512200-25517200	Weak transcription	Stomach Mucosa	stomach
6	chr14:25512400-25517200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr14:25512400-25517400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr14:25512600-25517600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr14:25513000-25517200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:25513000-25517600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr14:25513800-25517200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr14:25513800-25517400	Weak transcription	Right Atrium	heart
13	chr14:25514000-25517600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr14:25515200-25517400	Enhancers	Fetal Heart	heart
15	chr14:25515400-25517600	Enhancers	Brain Cingulate Gyrus	brain
16	chr14:25515600-25517400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr14:25515600-25517600	Enhancers	Brain Anterior Caudate	brain
18	chr14:25515600-25517800	Enhancers	HepG2	liver
19	chr14:25515800-25517400	Enhancers	Brain Substantia Nigra	brain
20	chr14:25515800-25517400	Enhancers	Pancreas	Pancrea
21	chr14:25515800-25517400	Enhancers	Placenta Amnion	Placenta Amnion
22	chr14:25515800-25517600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr14:25515800-25517600	Enhancers	Brain Angular Gyrus	brain
24	chr14:25515800-25517800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr14:25515800-25518200	Enhancers	K562	blood
26	chr14:25516000-25517600	Enhancers	Colon Smooth Muscle	Colon
27	chr14:25516000-25518000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr14:25516200-25517200	Weak transcription	HSMM	muscle
29	chr14:25516200-25517400	Enhancers	Fetal Lung	lung
30	chr14:25516200-25517600	Weak transcription	Gastric	stomach
31	chr14:25516200-25517800	Weak transcription	Esophagus	oesophagus
32	chr14:25516400-25517400	Weak transcription	Left Ventricle	heart
33	chr14:25516800-25517200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr14:25516800-25517200	Enhancers	NHLF	lung
35	chr14:25517000-25517200	Enhancers	Placenta	Placenta
36	chr14:25517000-25517200	Flanking Active TSS	Right Ventricle	heart
37	chr14:25517000-25517400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr14:25517000-25517400	Enhancers	Brain Hippocampus Middle	brain
39	chr14:25517000-25517400	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr14:25517000-25517400	Active TSS	Stomach Smooth Muscle	stomach
41	chr14:25517000-25517600	Enhancers	Fetal Intestine Large	intestine
42	chr14:25517000-25517600	Enhancers	Fetal Intestine Small	intestine
43	chr14:25517000-25517800	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr14:25517000-25518000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr14:25517000-25520000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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