Variant report

Variant	rs768972
Chromosome Location	chr14:25523460-25523461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17201092	1.00[ASN][1000 genomes]
rs1952496	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4444253	1.00[ASN][1000 genomes]
rs4617771	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55653788	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55787005	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55802928	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55979729	1.00[ASN][1000 genomes]
rs56079418	1.00[ASN][1000 genomes]
rs56091828	0.99[EUR][1000 genomes]
rs61978850	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979906	1.00[ASN][1000 genomes]
rs72682996	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv901510	chr14:25476170-25526309	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv901511	chr14:25505085-25588029	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25520200-25525200	Weak transcription	Brain Substantia Nigra	brain
2	chr14:25520200-25525600	Weak transcription	Brain Angular Gyrus	brain
3	chr14:25520400-25525600	Weak transcription	Brain Anterior Caudate	brain
4	chr14:25520400-25525600	Weak transcription	Brain Hippocampus Middle	brain
5	chr14:25520800-25525000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr14:25520800-25525000	Weak transcription	HSMM	muscle
7	chr14:25520800-25525200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:25520800-25525600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:25520800-25526000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr14:25521200-25524200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr14:25521200-25524200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:25521600-25534400	Weak transcription	Pancreas	Pancrea
13	chr14:25522000-25526200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr14:25522400-25525000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr14:25522600-25523600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr14:25523000-25526000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr14:25523400-25526000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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