Variant report

Variant	rs72685878
Chromosome Location	chr14:47906435-47906436
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17745673	0.89[ASN][1000 genomes]
rs55862063	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72685862	0.94[ASN][1000 genomes]
rs72687639	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530661	chr14:47754197-47937396	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv498118	chr14:47754197-48274409	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:47900200-47906800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr14:47900400-47907000	Weak transcription	Brain Angular Gyrus	brain
3	chr14:47902800-47907000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr14:47903200-47907000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr14:47903200-47907000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr14:47903200-47907000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr14:47903600-47907400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr14:47903800-47906800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr14:47903800-47907200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr14:47904400-47909800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr14:47904800-47906800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr14:47905000-47906800	Weak transcription	Brain Hippocampus Middle	brain
13	chr14:47905200-47906800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:47905200-47907000	Weak transcription	Brain Substantia Nigra	brain
15	chr14:47905200-47907800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:47905400-47907800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:47906200-47906600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr14:47906200-47907400	Enhancers	Fetal Heart	heart
19	chr14:47906200-47907600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr14:47906400-47907200	Weak transcription	Brain Germinal Matrix	brain
21	chr14:47906400-47908600	Enhancers	Brain Anterior Caudate	brain

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