Variant report

Variant	rs72685862
Chromosome Location	chr14:47891886-47891887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10483568	0.89[EUR][1000 genomes]
rs12433991	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12436176	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12436524	0.84[EUR][1000 genomes]
rs17118432	0.84[EUR][1000 genomes]
rs17118453	0.92[EUR][1000 genomes]
rs17674501	0.84[EUR][1000 genomes]
rs17684860	0.89[EUR][1000 genomes]
rs17742627	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17745673	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17746124	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55862063	0.92[ASN][1000 genomes]
rs72670711	0.89[EUR][1000 genomes]
rs72670747	0.80[EUR][1000 genomes]
rs72685878	0.94[ASN][1000 genomes]
rs72687639	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530661	chr14:47754197-47937396	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv498118	chr14:47754197-48274409	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:47890200-47892000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr14:47890400-47892000	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr14:47890400-47892200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr14:47890400-47892400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:47890600-47892000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr14:47890600-47892000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:47890600-47892400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr14:47890600-47892800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr14:47890600-47892800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:47890600-47892800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr14:47890800-47899800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr14:47891000-47892000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr14:47891800-47899800	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links