Variant report

Variant	rs72685936
Chromosome Location	chr4:122076733-122076734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11939533	1.00[ASN][1000 genomes]
rs17051328	1.00[ASN][1000 genomes]
rs59101989	1.00[ASN][1000 genomes]
rs60066217	1.00[ASN][1000 genomes]
rs72684102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72685957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72685958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72685960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73843572	1.00[ASN][1000 genomes]
rs73843574	1.00[ASN][1000 genomes]
rs73843575	1.00[ASN][1000 genomes]
rs73843582	1.00[ASN][1000 genomes]
rs73843591	1.00[ASN][1000 genomes]
rs7661816	1.00[ASN][1000 genomes]
rs7679404	1.00[ASN][1000 genomes]
rs7683911	1.00[ASN][1000 genomes]
rs7684826	1.00[ASN][1000 genomes]
rs7688163	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1009395	chr4:121841442-122557363	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv537235	chr4:121841442-122557363	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3386870	chr4:121867625-122208448	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv879859	chr4:121892490-122438312	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv879860	chr4:122030864-122126808	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:122073200-122077600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr4:122074000-122077000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:122075200-122077200	Weak transcription	Small Intestine	intestine
4	chr4:122075400-122077200	Weak transcription	Fetal Lung	lung
5	chr4:122075400-122077800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr4:122075400-122078000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr4:122075600-122077200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:122075600-122077600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr4:122075600-122077800	Enhancers	Primary T cells fromperipheralblood	blood
10	chr4:122075600-122077800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr4:122075600-122078000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr4:122075800-122077800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr4:122075800-122077800	Enhancers	Dnd41	blood
14	chr4:122075800-122078000	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr4:122076000-122077200	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr4:122076000-122077200	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr4:122076000-122077400	Enhancers	Primary T cells from cord blood	blood
18	chr4:122076000-122077400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr4:122076000-122077600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr4:122076000-122078000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr4:122076000-122078000	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr4:122076000-122078000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr4:122076400-122077200	Weak transcription	Fetal Thymus	thymus
24	chr4:122076600-122076800	Flanking Active TSS	NHDF-Ad	bronchial
25	chr4:122076600-122077000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:122076600-122077000	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr4:122076600-122077200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr4:122076600-122077200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
29	chr4:122076600-122077200	Enhancers	A549	lung
30	chr4:122076600-122077200	Enhancers	HUVEC	blood vessel
31	chr4:122076600-122077200	Enhancers	Osteobl	bone
32	chr4:122076600-122077400	Enhancers	Muscle Satellite Cultured Cells	--
33	chr4:122076600-122077400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:122076600-122077800	Enhancers	Thymus	Thymus

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