Variant report

Variant	rs7679404
Chromosome Location	chr4:122191004-122191005
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11939533	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17051328	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59101989	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60066217	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684102	1.00[ASN][1000 genomes]
rs72685936	1.00[ASN][1000 genomes]
rs72685957	1.00[ASN][1000 genomes]
rs72685958	1.00[ASN][1000 genomes]
rs72685960	1.00[ASN][1000 genomes]
rs73843572	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73843574	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73843575	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73843582	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73843591	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661816	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7683911	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7684826	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688163	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1009395	chr4:121841442-122557363	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv537235	chr4:121841442-122557363	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3386870	chr4:121867625-122208448	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv879859	chr4:121892490-122438312	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv817261	chr4:122085173-123020068	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:122188400-122192400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:122189000-122193200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:122189000-122193600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:122190600-122192600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:122190600-122196000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:122190800-122193000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:122190800-122193200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:122190800-122199000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:122190800-122199600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:122191000-122193200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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