Variant report

Variant	rs726864
Chromosome Location	chr1:152400293-152400294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:152398888..152401271-chr1:152403160..152405012,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10888486	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11204982	0.81[JPT][hapmap]
rs11204985	0.81[JPT][hapmap]
rs11204986	0.81[JPT][hapmap]
rs12029431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12049036	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs12403031	0.85[JPT][hapmap]
rs12408401	0.85[CEU][hapmap]
rs12568784	0.81[JPT][hapmap]
rs1923491	0.92[CHB][hapmap]
rs1923493	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap]
rs2065954	0.81[JPT][hapmap]
rs2146117	0.83[CEU][hapmap]
rs3753443	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs3753444	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap]
rs3829868	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4285700	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4845766	0.92[CHB][hapmap];0.83[JPT][hapmap];0.87[YRI][hapmap]
rs6679449	0.81[JPT][hapmap]
rs6696556	0.83[CEU][hapmap]
rs7515448	0.81[JPT][hapmap]
rs7521839	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1005472	chr1:152247763-152443448	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv535161	chr1:152247763-152443448	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv916016	chr1:152337775-152590520	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv872443	chr1:152400055-152459747	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152399600-152400600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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