Variant report

Variant	rs726865
Chromosome Location	chr1:152400055-152400056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:152398888..152401271-chr1:152403160..152405012,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10888486	0.91[CHB][hapmap];0.82[CHD][hapmap]
rs10888488	0.80[EUR][1000 genomes]
rs11205001	0.84[ASN][1000 genomes]
rs11205002	0.81[EUR][1000 genomes]
rs11205003	0.83[CEU][hapmap]
rs11583558	0.81[ASN][1000 genomes]
rs11590822	0.84[ASN][1000 genomes]
rs12029431	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs12048587	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12049036	0.86[CHB][hapmap]
rs12069640	0.83[CEU][hapmap]
rs16834090	0.83[CEU][hapmap];0.82[TSI][hapmap]
rs1923491	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1923493	0.91[CHB][hapmap]
rs1923498	0.85[CEU][hapmap]
rs1923499	0.87[CEU][hapmap]
rs2146121	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3753443	0.91[CHB][hapmap];0.82[CHD][hapmap]
rs3753444	0.91[CHB][hapmap]
rs3753446	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3829868	0.91[CHB][hapmap];0.82[CHD][hapmap]
rs4285700	0.91[CHB][hapmap];0.82[CHD][hapmap]
rs4845436	0.81[CEU][hapmap]
rs4845438	0.81[CEU][hapmap]
rs4845766	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4845770	0.82[CEU][hapmap]
rs4845771	0.83[CEU][hapmap];0.82[TSI][hapmap]
rs6679899	0.84[ASN][1000 genomes]
rs6695950	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs726863	0.90[ASN][1000 genomes]
rs7515448	0.85[MKK][hapmap]
rs7521839	0.91[CHB][hapmap];0.82[CHD][hapmap]
rs7548609	0.82[CEU][hapmap]
rs7555924	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs986903	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1005472	chr1:152247763-152443448	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv535161	chr1:152247763-152443448	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv916016	chr1:152337775-152590520	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv872443	chr1:152400055-152459747	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152399400-152400200	Enhancers	NHEK	skin
2	chr1:152399600-152400200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:152399600-152400600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:152399800-152400200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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