Variant report
| Variant | rs7555924 |
|---|---|
| Chromosome Location | chr1:152397069-152397070 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10888486 | 0.87[CHB][hapmap] |
| rs11205003 | 0.87[CEU][hapmap] |
| rs12029431 | 0.92[CHB][hapmap];0.83[JPT][hapmap] |
| rs12048587 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12049036 | 0.82[CHB][hapmap] |
| rs12069640 | 0.88[CEU][hapmap] |
| rs16834090 | 0.87[CEU][hapmap] |
| rs1923491 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1923493 | 0.88[CHB][hapmap] |
| rs1923498 | 0.91[CEU][hapmap] |
| rs1923499 | 0.92[CEU][hapmap] |
| rs2146121 | 0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3753443 | 0.87[CHB][hapmap] |
| rs3753444 | 0.88[CHB][hapmap] |
| rs3753446 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3829868 | 0.87[CHB][hapmap];0.81[JPT][hapmap] |
| rs4285700 | 0.87[CHB][hapmap] |
| rs4845436 | 0.86[CEU][hapmap] |
| rs4845438 | 0.86[CEU][hapmap] |
| rs4845766 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4845770 | 0.87[CEU][hapmap] |
| rs4845771 | 0.87[CEU][hapmap] |
| rs6695950 | 0.92[CEU][hapmap] |
| rs726863 | 0.82[ASN][1000 genomes] |
| rs726865 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7521839 | 0.87[CHB][hapmap] |
| rs7548609 | 0.87[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014095 | chr1:152104486-152454591 | Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv1005472 | chr1:152247763-152443448 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 3 | nsv535161 | chr1:152247763-152443448 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 4 | nsv916016 | chr1:152337775-152590520 | Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:152392400-152399600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
