Variant report

Variant	rs72686513
Chromosome Location	chr8:107952387-107952388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1002900	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1002901	0.89[EUR][1000 genomes]
rs1002902	0.89[EUR][1000 genomes]
rs11987645	0.89[EUR][1000 genomes]
rs11997014	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11998230	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1350885	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1462006	0.89[EUR][1000 genomes]
rs16875343	0.93[EUR][1000 genomes]
rs17227435	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4092515	0.91[EUR][1000 genomes]
rs4236781	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4397377	0.89[EUR][1000 genomes]
rs4455802	0.80[AMR][1000 genomes]
rs4734140	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734143	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734937	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734938	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4734939	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4734940	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55669016	0.89[EUR][1000 genomes]
rs55777833	0.83[ASN][1000 genomes]
rs55940496	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55976003	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56148417	0.89[EUR][1000 genomes]
rs56389527	0.89[EUR][1000 genomes]
rs59784602	0.93[EUR][1000 genomes]
rs62515164	0.89[EUR][1000 genomes]
rs6469086	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6981341	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001053	0.84[EUR][1000 genomes]
rs72684566	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684572	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72686510	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72686512	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9774736	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029202	chr8:107796289-108384241	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539712	chr8:107796289-108384241	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1034210	chr8:107796489-108384102	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539713	chr8:107796489-108384102	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv529383	chr8:107796490-108368465	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv915821	chr8:107796490-108393008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv916496	chr8:107813722-108338822	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028726	chr8:107816841-108392547	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv497805	chr8:107852509-108368371	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1028916	chr8:107925350-107974654	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv516674	chr8:107944671-107955559	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv2761458	chr8:107947610-107958891	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv465759	chr8:107948846-107993651	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv611850	chr8:107948846-107993651	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107951200-107952400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:107951200-107952400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:107951200-107952400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:107951200-107952400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:107951200-107952400	Enhancers	HMEC	breast
6	chr8:107951200-107952400	Enhancers	NHEK	skin
7	chr8:107951200-107952400	Enhancers	Osteobl	bone
8	chr8:107951200-107952600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr8:107951200-107952800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:107951400-107952400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr8:107951400-107952400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr8:107951400-107952400	Enhancers	A549	lung
13	chr8:107951400-107952400	Enhancers	HSMM	muscle
14	chr8:107951400-107952400	Enhancers	NH-A	brain
15	chr8:107952000-107952400	Enhancers	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links