Variant report
Variant | rs72686524 |
---|---|
Chromosome Location | chr4:120965172-120965173 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | SETDB1 | chr4:120964713-120965317 | U2OS | brain: | n/a | n/a |
2 | IRF1 | chr4:120964821-120965410 | K562 | blood: | n/a | chr4:120965180-120965201 |
3 | IRF1 | chr4:120965013-120965331 | K562 | blood: | n/a | chr4:120965180-120965201 |
4 | IRF1 | chr4:120965027-120965354 | K562 | blood: | n/a | chr4:120965180-120965201 |
No data |
(count:4 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:120956553..120960562-chr4:120961898..120965735,4 | K562 | blood: | |
2 | chr4:120965102..120968292-chr4:120969292..120973289,4 | K562 | blood: | |
3 | chr4:120958158..120959809-chr4:120965003..120967800,2 | K562 | blood: | |
4 | chr4:120964367..120966016-chr4:120972622..120975603,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000253825 | TF binding region |
rs_ID | r2[population] |
---|---|
rs10446729 | 1.00[AFR][1000 genomes] |
rs10446730 | 1.00[AFR][1000 genomes] |
rs11777 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs12374385 | 0.92[EUR][1000 genomes] |
rs61752609 | 1.00[AFR][1000 genomes] |
rs61752610 | 1.00[AFR][1000 genomes] |
rs6833927 | 1.00[AFR][1000 genomes] |
rs72668809 | 1.00[AFR][1000 genomes] |
rs72668810 | 1.00[AFR][1000 genomes] |
rs72668812 | 1.00[AFR][1000 genomes] |
rs72668814 | 1.00[AFR][1000 genomes] |
rs72668820 | 1.00[AFR][1000 genomes] |
rs72668821 | 1.00[AFR][1000 genomes] |
rs72668824 | 1.00[AFR][1000 genomes] |
rs72668829 | 1.00[AFR][1000 genomes] |
rs72668830 | 1.00[AFR][1000 genomes] |
rs72668835 | 1.00[AFR][1000 genomes] |
rs72668836 | 1.00[AFR][1000 genomes] |
rs72668838 | 1.00[AFR][1000 genomes] |
rs72668839 | 1.00[AFR][1000 genomes] |
rs72668840 | 1.00[AFR][1000 genomes] |
rs72668859 | 1.00[AFR][1000 genomes] |
rs72668868 | 1.00[AFR][1000 genomes] |
rs72668872 | 1.00[AFR][1000 genomes] |
rs72668874 | 1.00[AFR][1000 genomes] |
rs72668875 | 1.00[AFR][1000 genomes] |
rs72668898 | 1.00[AFR][1000 genomes] |
rs72668899 | 1.00[AFR][1000 genomes] |
rs72668902 | 1.00[AFR][1000 genomes] |
rs72670409 | 1.00[AFR][1000 genomes] |
rs72670410 | 1.00[AFR][1000 genomes] |
rs72670412 | 1.00[AFR][1000 genomes] |
rs72670414 | 1.00[AFR][1000 genomes] |
rs72670415 | 1.00[AFR][1000 genomes] |
rs72670416 | 1.00[AFR][1000 genomes] |
rs72670420 | 1.00[AFR][1000 genomes] |
rs72670421 | 1.00[AFR][1000 genomes] |
rs72670425 | 1.00[AFR][1000 genomes] |
rs72670427 | 1.00[AFR][1000 genomes] |
rs72670428 | 1.00[AFR][1000 genomes] |
rs72686517 | 1.00[AFR][1000 genomes] |
rs72686518 | 1.00[AFR][1000 genomes] |
rs72686525 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72686526 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72686529 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72686534 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs72686538 | 1.00[AFR][1000 genomes] |
rs72686541 | 1.00[AFR][1000 genomes] |
rs72686542 | 1.00[AFR][1000 genomes] |
rs72686543 | 1.00[AFR][1000 genomes] |
rs72686544 | 1.00[AFR][1000 genomes] |
rs72686546 | 1.00[AFR][1000 genomes] |
rs72686547 | 1.00[AFR][1000 genomes] |
rs72686550 | 1.00[AFR][1000 genomes] |
rs72686552 | 1.00[AFR][1000 genomes] |
rs7662162 | 1.00[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv532739 | chr4:120392824-121098103 | Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
2 | nsv1007641 | chr4:120884220-121555889 | Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
3 | nsv537234 | chr4:120884220-121555889 | Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
4 | nsv879850 | chr4:120898509-120969089 | Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv879851 | chr4:120942372-120984077 | Genic enhancers Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
6 | esv3466122 | chr4:120962004-120967102 | Weak transcription Enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
7 | esv3511179 | chr4:120962304-120966302 | Enhancers Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
8 | esv3511178 | chr4:120962954-120966152 | Weak transcription Enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
9 | esv3466120 | chr4:120963415-120965200 | Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
10 | esv3511180 | chr4:120963427-120965209 | Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
11 | esv3511181 | chr4:120963428-120965205 | Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
12 | esv3466121 | chr4:120963442-120965184 | Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
13 | esv3511182 | chr4:120963458-120965178 | Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
14 | esv3511183 | chr4:120963458-120965205 | Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
15 | esv3466117 | chr4:120963488-120965189 | Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
16 | esv1817519 | chr4:120963960-120968070 | Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:120962200-120987200 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |