Variant report

Variant	rs72692261
Chromosome Location	chr4:103262478-103262479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:103257918..103260237-chr4:103260669..103263313,2	K562	blood:
2	chr4:103262389..103264816-chr4:103397945..103400570,2	K562	blood:
3	chr4:103259206..103263947-chr4:103264317..103267329,6	MCF-7	breast:
4	chr4:103262099..103264572-chr4:103356981..103359611,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138821	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11097773	0.81[ASN][1000 genomes]
rs11724124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11735688	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1545744	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs35411892	0.81[ASN][1000 genomes]
rs4699011	0.81[ASN][1000 genomes]
rs4699013	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4699015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814003	0.81[ASN][1000 genomes]
rs6855535	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs72692248	0.84[ASN][1000 genomes]
rs922361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971752	0.83[ASN][1000 genomes]
rs998719	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103224000-103263600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:103237400-103264000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:103241200-103263600	Weak transcription	Liver	Liver
4	chr4:103241200-103263600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:103242600-103263400	Weak transcription	Lung	lung
6	chr4:103255000-103264600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:103256000-103263400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr4:103257200-103262600	Weak transcription	Fetal Thymus	thymus
9	chr4:103257600-103264200	Weak transcription	A549	lung
10	chr4:103258200-103262600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:103258800-103263400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:103258800-103265000	Weak transcription	Pancreas	Pancrea
13	chr4:103259000-103263400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr4:103259000-103264400	Weak transcription	Primary B cells from cord blood	blood
15	chr4:103259000-103265000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:103259400-103263600	Weak transcription	Thymus	Thymus
17	chr4:103259600-103263600	Enhancers	K562	blood
18	chr4:103259800-103262600	Enhancers	Placenta Amnion	Placenta Amnion
19	chr4:103260200-103262600	Enhancers	Hela-S3	cervix
20	chr4:103260400-103264000	Weak transcription	NHEK	skin
21	chr4:103260800-103263200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr4:103260800-103264000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:103260800-103264200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr4:103261000-103263800	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr4:103261000-103264000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr4:103261000-103264000	Weak transcription	HMEC	breast
27	chr4:103261000-103264400	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr4:103261000-103265000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr4:103261000-103265000	Weak transcription	Ovary	ovary
30	chr4:103261200-103264000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr4:103261400-103263800	Enhancers	Primary hematopoietic stem cells	blood
32	chr4:103261400-103264200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr4:103261600-103262600	Enhancers	HSMM	muscle
34	chr4:103261600-103263000	Enhancers	Muscle Satellite Cultured Cells	--
35	chr4:103261600-103263200	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr4:103261600-103263800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr4:103261600-103264600	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr4:103261800-103263200	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr4:103261800-103264000	Enhancers	Placenta	Placenta
40	chr4:103261800-103264400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr4:103261800-103265200	Weak transcription	Stomach Mucosa	stomach
42	chr4:103262000-103262600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr4:103262000-103262800	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr4:103262000-103262800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr4:103262000-103262800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr4:103262000-103263000	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr4:103262000-103263200	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr4:103262000-103263600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr4:103262000-103263800	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr4:103262000-103264000	Enhancers	Primary T helper naive cells from peripheral blood	blood

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