Variant report

Variant	rs922361
Chromosome Location	chr4:103270070-103270071
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11097773	0.81[ASN][1000 genomes]
rs11724124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11735688	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13103835	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs1545744	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs35411892	0.81[ASN][1000 genomes]
rs4699011	0.92[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs4699013	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4699015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814003	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6822371	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs6855535	1.00[ASW][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs72692248	0.84[ASN][1000 genomes]
rs72692261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971752	1.00[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs998719	1.00[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs922361	NHEDC2	cis	cerebellum	SCAN
rs922361	SLC39A8	cis	cerebellum	SCAN
rs922361	SLC39A8	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103267200-103273000	Weak transcription	Colonic Mucosa	Colon
2	chr4:103267200-103273800	Weak transcription	Ovary	ovary
3	chr4:103267400-103271400	Weak transcription	K562	blood
4	chr4:103267600-103270600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr4:103268200-103273400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:103268200-103277000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:103268400-103270400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr4:103269800-103270200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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