Variant report

Variant	rs72692608
Chromosome Location	chr4:99782556-99782557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1160489	0.88[ASN][1000 genomes]
rs12331010	0.81[ASN][1000 genomes]
rs1443807	0.85[ASN][1000 genomes]
rs2028685	0.84[EUR][1000 genomes]
rs2028686	0.84[EUR][1000 genomes]
rs3749547	0.84[EUR][1000 genomes]
rs4699680	0.86[ASN][1000 genomes]
rs6532769	0.89[ASN][1000 genomes]
rs66761677	0.84[EUR][1000 genomes]
rs66809909	0.84[EUR][1000 genomes]
rs67517620	0.80[EUR][1000 genomes]
rs6843891	0.85[ASN][1000 genomes]
rs72692611	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7654109	0.84[EUR][1000 genomes]
rs7677046	0.89[ASN][1000 genomes]
rs961757	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv879654	chr4:99748988-99877402	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99781600-99782600	Enhancers	Fetal Heart	heart
2	chr4:99781800-99782800	Flanking Active TSS	K562	blood
3	chr4:99782400-99782600	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr4:99782400-99782800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr4:99782400-99783600	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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