Variant report

Variant	rs6843891
Chromosome Location	chr4:99748968-99748969
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:99746970..99749619-chr4:99849766..99852296,2	K562	blood:
2	chr4:99717785..99719444-chr4:99748897..99750692,2	K562	blood:
3	chr4:99745735..99748046-chr4:99748650..99751093,2	MCF-7	breast:
4	chr4:99748120..99750240-chr4:99751685..99753984,3	K562	blood:

Variant related genes	Relation type
ENSG00000238449	Chromatin interaction
ENSG00000263923	Chromatin interaction
ENSG00000151247	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11097635	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11097636	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1160489	0.94[ASN][1000 genomes]
rs12331010	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12641639	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12649579	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13114194	0.91[ASN][1000 genomes]
rs1373244	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1373245	0.89[EUR][1000 genomes]
rs1443807	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1596416	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17028113	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1838229	0.91[ASN][1000 genomes]
rs1838231	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1867343	0.89[EUR][1000 genomes]
rs1918739	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1918740	0.87[ASN][1000 genomes]
rs1918741	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2178126	1.00[AFR][1000 genomes]
rs28575435	0.91[ASN][1000 genomes]
rs34067149	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34200603	1.00[AFR][1000 genomes]
rs34417635	1.00[AFR][1000 genomes]
rs34700224	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35197129	0.89[EUR][1000 genomes]
rs35408186	0.91[ASN][1000 genomes]
rs35680032	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36141320	0.84[ASN][1000 genomes]
rs4699680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56031708	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62323694	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62323700	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6532769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.92[ASN][1000 genomes]
rs6835829	0.89[EUR][1000 genomes]
rs6836719	0.89[EUR][1000 genomes]
rs6839230	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs6846565	0.80[ASN][1000 genomes]
rs72692608	0.85[ASN][1000 genomes]
rs72692611	0.82[ASN][1000 genomes]
rs7656445	0.91[ASN][1000 genomes]
rs7664592	0.91[ASN][1000 genomes]
rs7677046	0.92[ASN][1000 genomes]
rs7696219	0.90[ASN][1000 genomes]
rs961757	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99748200-99749000	Enhancers	HSMMtube	muscle
2	chr4:99748200-99749400	Enhancers	HUVEC	blood vessel
3	chr4:99748400-99749000	Enhancers	HSMM	muscle
4	chr4:99748600-99749000	Enhancers	Sigmoid Colon	Sigmoid Colon

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