Variant report

Variant	rs35680032
Chromosome Location	chr4:99721136-99721137
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99715948..99720338-chr4:99720827..99725738,5	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11097635	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11097636	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1160489	0.84[ASN][1000 genomes]
rs12331010	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12641639	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12649579	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13114194	0.99[ASN][1000 genomes]
rs1373244	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1373245	0.94[EUR][1000 genomes]
rs1443807	0.90[ASN][1000 genomes]
rs1596416	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17028113	0.91[EUR][1000 genomes]
rs1838229	0.99[ASN][1000 genomes]
rs1838231	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1867343	0.94[EUR][1000 genomes]
rs1918739	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1918740	0.94[ASN][1000 genomes]
rs1918741	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28575435	0.99[ASN][1000 genomes]
rs34067149	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34700224	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35197129	0.94[EUR][1000 genomes]
rs35408186	0.99[ASN][1000 genomes]
rs36141320	0.91[ASN][1000 genomes]
rs4699680	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56031708	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62323694	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323700	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6532769	0.83[ASN][1000 genomes]
rs6835829	0.94[EUR][1000 genomes]
rs6836719	0.94[EUR][1000 genomes]
rs6843891	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6846565	0.87[ASN][1000 genomes]
rs7656445	0.99[ASN][1000 genomes]
rs7664592	0.99[ASN][1000 genomes]
rs7677046	0.83[ASN][1000 genomes]
rs7696219	0.97[ASN][1000 genomes]
rs961757	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99706200-99721800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:99716800-99721800	Weak transcription	K562	blood

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