Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99715948..99720338-chr4:99720827..99725738,5	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11097635	0.89[EUR][1000 genomes]
rs11097636	0.89[EUR][1000 genomes]
rs12331010	0.89[EUR][1000 genomes]
rs12641639	0.92[EUR][1000 genomes]
rs12649579	0.94[EUR][1000 genomes]
rs1373244	0.92[EUR][1000 genomes]
rs1373245	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1596416	0.89[EUR][1000 genomes]
rs17028113	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1822529	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1838231	0.89[EUR][1000 genomes]
rs1918739	0.94[EUR][1000 genomes]
rs1918741	0.92[EUR][1000 genomes]
rs34067149	0.89[EUR][1000 genomes]
rs34700224	0.94[EUR][1000 genomes]
rs35197129	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35680032	0.94[EUR][1000 genomes]
rs4699680	0.89[EUR][1000 genomes]
rs56031708	0.94[EUR][1000 genomes]
rs62323694	0.94[EUR][1000 genomes]
rs62323700	0.94[EUR][1000 genomes]
rs6532769	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs6835829	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6836719	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6843891	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs961757	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99706200-99721800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:99716800-99721800	Weak transcription	K562	blood
3	chr4:99719800-99720600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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