Variant report

No.	Distal block	Cell Line	Cell type
1	chr4:99715948..99720338-chr4:99720827..99725738,5	K562	blood:
2	chr4:99717785..99719444-chr4:99748897..99750692,2	K562	blood:
3	chr4:99667440..99670653-chr4:99714761..99718485,3	K562	blood:
4	chr4:99714920..99718042-chr4:99721691..99724674,4	K562	blood:
5	chr4:99715086..99718042-chr4:99840972..99844628,4	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11097635	0.89[EUR][1000 genomes]
rs11097636	0.89[EUR][1000 genomes]
rs12331010	0.89[EUR][1000 genomes]
rs12641639	0.92[EUR][1000 genomes]
rs12649579	0.94[EUR][1000 genomes]
rs1373244	0.92[EUR][1000 genomes]
rs1373245	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1596416	0.89[EUR][1000 genomes]
rs17028113	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1838231	0.89[EUR][1000 genomes]
rs1867343	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1918739	0.94[EUR][1000 genomes]
rs1918741	0.92[EUR][1000 genomes]
rs34067149	0.89[EUR][1000 genomes]
rs34700224	0.94[EUR][1000 genomes]
rs35197129	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35680032	0.94[EUR][1000 genomes]
rs4699680	0.89[EUR][1000 genomes]
rs56031708	0.94[EUR][1000 genomes]
rs62323694	0.94[EUR][1000 genomes]
rs62323700	0.94[EUR][1000 genomes]
rs6835829	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6843891	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99706200-99721800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:99716200-99718200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:99716400-99719000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:99716400-99719000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:99716800-99718200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:99716800-99721800	Weak transcription	K562	blood

Quick Search: