Variant report

Variant	rs56031708
Chromosome Location	chr4:99730024-99730025
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99725398..99727273-chr4:99729842..99731719,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11097635	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11097636	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1160489	0.85[ASN][1000 genomes]
rs12331010	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12641639	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12649579	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13114194	1.00[ASN][1000 genomes]
rs1373244	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1373245	0.94[EUR][1000 genomes]
rs1443807	0.91[ASN][1000 genomes]
rs1596416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17028113	0.91[EUR][1000 genomes]
rs1838229	1.00[ASN][1000 genomes]
rs1838231	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1867343	0.94[EUR][1000 genomes]
rs1918739	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1918740	0.96[ASN][1000 genomes]
rs1918741	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28575435	1.00[ASN][1000 genomes]
rs34067149	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34700224	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35197129	0.94[EUR][1000 genomes]
rs35408186	1.00[ASN][1000 genomes]
rs35680032	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36141320	0.92[ASN][1000 genomes]
rs4699680	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62323694	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62323700	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532769	0.84[ASN][1000 genomes]
rs6835829	0.94[EUR][1000 genomes]
rs6836719	0.94[EUR][1000 genomes]
rs6843891	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6846565	0.89[ASN][1000 genomes]
rs7656445	1.00[ASN][1000 genomes]
rs7664592	1.00[ASN][1000 genomes]
rs7677046	0.84[ASN][1000 genomes]
rs7696219	0.99[ASN][1000 genomes]
rs961757	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99729200-99730200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:99729600-99730800	Enhancers	Brain Substantia Nigra	brain
3	chr4:99730000-99730800	Enhancers	Brain Angular Gyrus	brain
4	chr4:99730000-99730800	Enhancers	Brain Hippocampus Middle	brain

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