Variant report
| Variant | rs6846565 |
|---|---|
| Chromosome Location | chr4:99728055-99728056 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11097635 | 0.88[ASN][1000 genomes] |
| rs11097636 | 0.85[ASN][1000 genomes] |
| rs12641639 | 0.89[ASN][1000 genomes] |
| rs12649579 | 0.89[ASN][1000 genomes] |
| rs13114194 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1373244 | 0.89[ASN][1000 genomes] |
| rs1443807 | 0.92[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1596416 | 0.89[ASN][1000 genomes] |
| rs1838229 | 0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1838231 | 0.89[ASN][1000 genomes] |
| rs1918739 | 0.89[ASN][1000 genomes] |
| rs1918740 | 0.87[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1918741 | 0.89[ASN][1000 genomes] |
| rs28575435 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs34067149 | 0.87[ASN][1000 genomes] |
| rs34700224 | 0.89[ASN][1000 genomes] |
| rs35408186 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs35680032 | 0.87[ASN][1000 genomes] |
| rs36141320 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs56031708 | 0.89[ASN][1000 genomes] |
| rs62323694 | 0.87[ASN][1000 genomes] |
| rs62323700 | 0.89[ASN][1000 genomes] |
| rs6839230 | 0.82[EUR][1000 genomes] |
| rs6843891 | 0.80[ASN][1000 genomes] |
| rs7656445 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7664592 | 0.89[ASN][1000 genomes] |
| rs7696219 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009017 | chr4:99669441-100406394 | Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 57 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:99724600-99729600 | Weak transcription | Brain Substantia Nigra | brain |
| 2 | chr4:99724600-99730000 | Weak transcription | Brain Angular Gyrus | brain |
