Variant report

Variant	rs28575435
Chromosome Location	chr4:99728914-99728915
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11097635	0.99[ASN][1000 genomes]
rs11097636	0.96[ASN][1000 genomes]
rs1160489	0.85[ASN][1000 genomes]
rs12331010	0.91[ASN][1000 genomes]
rs12641639	1.00[ASN][1000 genomes]
rs12649579	1.00[ASN][1000 genomes]
rs13114194	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1373244	1.00[ASN][1000 genomes]
rs1443807	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1596416	1.00[ASN][1000 genomes]
rs1838229	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1838231	1.00[ASN][1000 genomes]
rs1918739	1.00[ASN][1000 genomes]
rs1918740	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1918741	1.00[ASN][1000 genomes]
rs34067149	0.99[ASN][1000 genomes]
rs34700224	1.00[ASN][1000 genomes]
rs35408186	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35680032	0.99[ASN][1000 genomes]
rs36141320	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4699680	0.89[ASN][1000 genomes]
rs56031708	1.00[ASN][1000 genomes]
rs62323694	0.99[ASN][1000 genomes]
rs62323700	1.00[ASN][1000 genomes]
rs6532769	0.84[ASN][1000 genomes]
rs6839230	0.84[EUR][1000 genomes]
rs6843891	0.91[ASN][1000 genomes]
rs6846565	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7656445	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664592	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7677046	0.84[ASN][1000 genomes]
rs7696219	0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs961757	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99724600-99729600	Weak transcription	Brain Substantia Nigra	brain
2	chr4:99724600-99730000	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links