Variant report

Variant	rs12641639
Chromosome Location	chr4:99723696-99723697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99714920..99718042-chr4:99721691..99724674,4	K562	blood:
2	chr4:99715948..99720338-chr4:99720827..99725738,5	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11097635	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11097636	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1160489	0.85[ASN][1000 genomes]
rs12331010	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12649579	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13114194	1.00[ASN][1000 genomes]
rs1373244	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1373245	0.92[EUR][1000 genomes]
rs1443807	0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs1596416	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17028113	1.00[CEU][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes]
rs1838229	1.00[ASN][1000 genomes]
rs1838231	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1867343	0.92[EUR][1000 genomes]
rs1918739	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1918740	0.96[ASN][1000 genomes]
rs1918741	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28575435	1.00[ASN][1000 genomes]
rs34067149	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34700224	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35197129	0.92[EUR][1000 genomes]
rs35408186	1.00[ASN][1000 genomes]
rs35680032	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36141320	0.92[ASN][1000 genomes]
rs4699680	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56031708	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323694	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62323700	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532769	1.00[CEU][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs6835829	0.92[EUR][1000 genomes]
rs6836719	0.92[EUR][1000 genomes]
rs6839230	0.94[JPT][hapmap]
rs6843891	1.00[CEU][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6846565	0.89[ASN][1000 genomes]
rs7656445	1.00[ASN][1000 genomes]
rs7664592	1.00[ASN][1000 genomes]
rs7677046	0.84[ASN][1000 genomes]
rs7696219	0.99[ASN][1000 genomes]
rs961757	1.00[CEU][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99721200-99725000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:99722000-99724600	Enhancers	Brain Substantia Nigra	brain
3	chr4:99722200-99724200	Enhancers	Brain Cingulate Gyrus	brain
4	chr4:99723000-99723800	Weak transcription	Brain Germinal Matrix	brain
5	chr4:99723000-99723800	Enhancers	Brain Hippocampus Middle	brain
6	chr4:99723000-99724400	Weak transcription	Left Ventricle	heart
7	chr4:99723000-99724600	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr4:99723200-99724200	Weak transcription	Brain Angular Gyrus	brain
9	chr4:99723400-99723800	Weak transcription	K562	blood

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