Variant report

Variant	rs1822529
Chromosome Location	chr4:99714547-99714548
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11097635	0.91[EUR][1000 genomes]
rs11097636	0.91[EUR][1000 genomes]
rs12331010	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12641639	0.94[EUR][1000 genomes]
rs12649579	0.97[EUR][1000 genomes]
rs1373244	0.94[EUR][1000 genomes]
rs1373245	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1596416	0.91[EUR][1000 genomes]
rs17028113	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1838231	0.91[EUR][1000 genomes]
rs1867343	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1918739	0.97[EUR][1000 genomes]
rs1918741	0.94[EUR][1000 genomes]
rs34067149	0.92[EUR][1000 genomes]
rs34700224	0.97[EUR][1000 genomes]
rs35197129	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35680032	0.97[EUR][1000 genomes]
rs4699680	0.91[EUR][1000 genomes]
rs56031708	0.97[EUR][1000 genomes]
rs62323694	0.97[EUR][1000 genomes]
rs62323700	0.97[EUR][1000 genomes]
rs6835829	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6836719	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6839230	0.80[ASN][1000 genomes]
rs6843891	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99702000-99716200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:99706200-99721800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:99711200-99714600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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