Variant report

Variant	rs72696827
Chromosome Location	chr9:9171032-9171033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72696862	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv892248	chr9:9024254-9176176	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv892249	chr9:9026854-9377679	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1033404	chr9:9058285-9211223	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv831505	chr9:9072216-9277320	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv2761491	chr9:9139951-9222892	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv892252	chr9:9164473-9476425	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9169600-9171600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr9:9170200-9171200	Enhancers	Brain Germinal Matrix	brain
3	chr9:9170400-9171200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:9170600-9171200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:9170800-9171200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr9:9170800-9171200	Enhancers	Brain Angular Gyrus	brain
7	chr9:9170800-9171200	Active TSS	Brain Anterior Caudate	brain
8	chr9:9170800-9171200	Enhancers	Fetal Lung	lung
9	chr9:9170800-9171400	Flanking Active TSS	Dnd41	blood
10	chr9:9171000-9171200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:9171000-9171200	Active TSS	Brain Cingulate Gyrus	brain
12	chr9:9171000-9171200	Active TSS	Brain Hippocampus Middle	brain
13	chr9:9171000-9171200	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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