Variant report

Variant	rs72701540
Chromosome Location	chr9:18191189-18191190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10963461	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10963463	0.83[AMR][1000 genomes]
rs10963476	0.85[ASN][1000 genomes]
rs10963480	0.90[ASN][1000 genomes]
rs10963482	0.88[ASN][1000 genomes]
rs10963486	0.90[ASN][1000 genomes]
rs10963514	0.88[ASN][1000 genomes]
rs12378796	0.85[ASN][1000 genomes]
rs4147272	0.85[ASN][1000 genomes]
rs67148084	0.81[ASN][1000 genomes]
rs7034973	0.83[ASN][1000 genomes]
rs72684942	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv892679	chr9:18044802-18226609	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv892681	chr9:18127068-18250459	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv892682	chr9:18166112-18272700	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1034518	chr9:18166899-18214878	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv520180	chr9:18187403-18193796	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18189600-18191200	Enhancers	Fetal Heart	heart
2	chr9:18189800-18191600	Enhancers	Liver	Liver
3	chr9:18190800-18191200	Enhancers	Brain Germinal Matrix	brain
4	chr9:18190800-18191600	Enhancers	Aorta	Aorta
5	chr9:18190800-18191600	Enhancers	Fetal Muscle Leg	muscle
6	chr9:18190800-18191600	Enhancers	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links