Variant report

Variant	rs72701780
Chromosome Location	chr1:168331506-168331507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12085802	0.81[EUR][1000 genomes]
rs61521307	0.81[EUR][1000 genomes]
rs6659763	0.81[EUR][1000 genomes]
rs72701770	0.81[EUR][1000 genomes]
rs72701772	0.95[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72701777	0.95[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72701779	1.00[EUR][1000 genomes]
rs72701781	1.00[EUR][1000 genomes]
rs72701783	1.00[EUR][1000 genomes]
rs72701784	1.00[EUR][1000 genomes]
rs72701794	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831825	chr1:168179175-168353062	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002007	chr1:168179463-168375973	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv872527	chr1:168327555-168375973	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168329200-168331600	Enhancers	Fetal Heart	heart
2	chr1:168329200-168332200	Enhancers	Placenta Amnion	Placenta Amnion
3	chr1:168329400-168333200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr1:168329400-168333200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr1:168329400-168333800	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr1:168329400-168334600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:168329600-168331800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr1:168329600-168331800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr1:168329600-168333600	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr1:168329600-168334000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr1:168330200-168332000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr1:168330200-168333600	Weak transcription	HepG2	liver
13	chr1:168330800-168333000	Weak transcription	Right Atrium	heart
14	chr1:168331200-168333000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr1:168331200-168341800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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