Variant report

Variant	rs72704943
Chromosome Location	chr1:158933008-158933009
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1102003	0.85[EUR][1000 genomes]
rs2078722	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2097593	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4512646	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6674847	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6674861	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72704921	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72704922	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72704925	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72704929	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72704930	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72704932	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72704933	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72704936	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72704937	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72704938	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72704944	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72704945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72704948	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525140	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7547305	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7553715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856070	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856071	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856085	0.81[EUR][1000 genomes]
rs856088	0.87[EUR][1000 genomes]
rs856090	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002401	chr1:158712627-158972031	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv3376764	chr1:158761947-158998617	Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1007597	chr1:158874806-158934301	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3369957	chr1:158915589-159003393	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158920600-158950600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:158923000-158949600	Weak transcription	Primary B cells from cord blood	blood
3	chr1:158931200-158933400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
4	chr1:158931200-158933400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr1:158931600-158939600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:158932000-158933600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:158932200-158934400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr1:158932400-158933400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:158932400-158934200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr1:158932400-158942400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr1:158932800-158933200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:158932800-158933400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr1:158933000-158935000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr1:158933000-158935000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links