Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs2078722	0.80[EUR][1000 genomes]
rs2097593	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs4512646	0.80[EUR][1000 genomes]
rs6674847	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs6674861	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs72704921	0.80[EUR][1000 genomes]
rs72704922	0.80[EUR][1000 genomes]
rs72704925	0.80[EUR][1000 genomes]
rs72704929	0.80[EUR][1000 genomes]
rs72704930	0.82[EUR][1000 genomes]
rs72704932	0.82[EUR][1000 genomes]
rs72704933	0.81[EUR][1000 genomes]
rs72704936	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72704937	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72704938	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72704943	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72704944	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72704945	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72704948	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7547305	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs7553715	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856071	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856085	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs856088	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs856090	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002401	chr1:158712627-158972031	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv3376764	chr1:158761947-158998617	Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1007597	chr1:158874806-158934301	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3369957	chr1:158915589-159003393	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158905800-158930200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr1:158920600-158950600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:158922400-158931000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:158922800-158931000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr1:158922800-158931200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr1:158922800-158931400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr1:158923000-158930000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr1:158923000-158930600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr1:158923000-158932400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:158923000-158949600	Weak transcription	Primary B cells from cord blood	blood
11	chr1:158928800-158931200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr1:158928800-158932400	Strong transcription	Primary T cells from cord blood	blood
13	chr1:158929000-158931200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr1:158929200-158932800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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