Variant report

Variant	rs72706857
Chromosome Location	chr14:97027805-97027806
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:97006749..97008466-chr14:97026369..97029131,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000090060	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10145194	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11160342	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11160343	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12147170	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12147717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12586332	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12586789	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12589747	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2297243	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28600893	0.81[ASN][1000 genomes]
rs3809425	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56088908	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56254662	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56960368	0.87[AFR][1000 genomes]
rs59323239	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61368673	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7142226	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72706848	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72706852	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72706853	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72706855	0.94[ASN][1000 genomes]
rs72706860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72706863	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72706864	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8003976	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042409	chr14:96832303-97115668	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv542178	chr14:96832303-97115668	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv3442210	chr14:96878392-97038700	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv1802671	chr14:96942352-97035680	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv1052499	chr14:96974524-97034805	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv1048302	chr14:97000845-97250538	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1041078	chr14:97001679-97279220	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
8	nsv1050075	chr14:97004951-97279220	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:96982000-97031400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:96984800-97039400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:96999400-97040600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr14:97002600-97033800	Weak transcription	Fetal Brain Male	brain
5	chr14:97006400-97040400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr14:97007600-97035200	Strong transcription	Primary B cells from peripheral blood	blood
7	chr14:97007600-97036000	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr14:97007800-97034800	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr14:97008000-97036000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr14:97008200-97033800	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr14:97008200-97035800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr14:97008200-97039400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:97008400-97033400	Strong transcription	Placenta	Placenta
14	chr14:97008400-97033600	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr14:97008400-97035200	Strong transcription	Dnd41	blood
16	chr14:97008400-97038400	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr14:97008600-97031400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:97008600-97033200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:97008600-97033800	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr14:97008600-97037000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr14:97008600-97040200	Strong transcription	Fetal Thymus	thymus
22	chr14:97008800-97033000	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr14:97009000-97029800	Strong transcription	Osteobl	bone
24	chr14:97009600-97034200	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr14:97009600-97037200	Strong transcription	HSMM	muscle
26	chr14:97010200-97040200	Strong transcription	Primary B cells from cord blood	blood
27	chr14:97011000-97031400	Weak transcription	Fetal Heart	heart
28	chr14:97011400-97034200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr14:97013000-97029400	Strong transcription	Fetal Intestine Large	intestine
30	chr14:97016800-97039200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr14:97017400-97030000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr14:97017400-97032600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr14:97017400-97035400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr14:97018200-97029600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr14:97018400-97034400	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr14:97018600-97029600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr14:97018600-97030000	Strong transcription	Hela-S3	cervix
38	chr14:97018600-97032000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr14:97018600-97032600	Strong transcription	Adipose Nuclei	Adipose
40	chr14:97019600-97042800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr14:97019800-97038800	Weak transcription	Small Intestine	intestine
42	chr14:97020200-97039400	Weak transcription	Psoas Muscle	Psoas
43	chr14:97020200-97039600	Weak transcription	Gastric	stomach
44	chr14:97020200-97042600	Weak transcription	Esophagus	oesophagus
45	chr14:97020400-97028200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr14:97020400-97040400	Weak transcription	Aorta	Aorta
47	chr14:97020400-97042800	Weak transcription	Spleen	Spleen
48	chr14:97020800-97040800	Weak transcription	Colonic Mucosa	Colon
49	chr14:97021000-97034200	Weak transcription	Stomach Mucosa	stomach
50	chr14:97022000-97028000	Strong transcription	NH-A	brain

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