Variant report
| Variant | rs72711164 |
|---|---|
| Chromosome Location | chr1:84516623-84516624 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000271576 | Chromatin interaction |
| ENSG00000142875 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs41301152 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72710861 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72710864 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72710875 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72711197 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs72713007 | 1.00[AFR][1000 genomes] |
| rs72719389 | 1.00[AFR][1000 genomes] |
| rs72719401 | 1.00[AFR][1000 genomes] |
| rs72720646 | 1.00[AFR][1000 genomes] |
| rs72722877 | 1.00[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72722887 | 1.00[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72722890 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72724911 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1732 | chr1:84499098-84544635 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv508360 | chr1:84500230-84524997 | Bivalent Enhancer Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv3498832 | chr1:84514725-84525109 | Enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv3498833 | chr1:84514725-84525109 | Enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv2479910 | chr1:84516210-84524807 | Enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:84516200-84517800 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
