Variant report

Variant	rs72722890
Chromosome Location	chr1:84356309-84356310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs72711164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72711197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72719389	1.00[AFR][1000 genomes]
rs72719401	1.00[AFR][1000 genomes]
rs72720646	1.00[AFR][1000 genomes]
rs72722877	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72722887	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72724911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871551	chr1:84354464-84453223	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84327000-84361800	Weak transcription	Fetal Brain Female	brain
2	chr1:84327000-84375400	Weak transcription	Brain Germinal Matrix	brain
3	chr1:84329000-84373000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:84333400-84382400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:84338800-84367600	Weak transcription	Pancreas	Pancrea
6	chr1:84341000-84359400	Weak transcription	Psoas Muscle	Psoas
7	chr1:84341200-84380400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr1:84343600-84361800	Weak transcription	Fetal Brain Male	brain
9	chr1:84345600-84384400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:84346800-84382400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:84349800-84365000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr1:84349800-84365800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:84349800-84380400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr1:84350000-84366000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:84350000-84366000	Weak transcription	NHDF-Ad	bronchial
16	chr1:84350200-84363000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:84350200-84363000	Weak transcription	NHEK	skin
18	chr1:84351000-84391400	Weak transcription	Fetal Stomach	stomach
19	chr1:84352800-84359400	Weak transcription	Aorta	Aorta
20	chr1:84352800-84382400	Weak transcription	Brain Anterior Caudate	brain
21	chr1:84353000-84365600	Weak transcription	HMEC	breast
22	chr1:84353400-84361800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr1:84353400-84375400	Weak transcription	Brain Angular Gyrus	brain
24	chr1:84354000-84380600	Weak transcription	Fetal Muscle Leg	muscle
25	chr1:84355200-84356600	Enhancers	HUVEC	blood vessel
26	chr1:84355600-84356400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr1:84355600-84361600	Weak transcription	Brain Hippocampus Middle	brain
28	chr1:84355600-84362800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr1:84355800-84362000	Weak transcription	Brain Substantia Nigra	brain
30	chr1:84355800-84363200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr1:84355800-84382200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr1:84355800-84382600	Weak transcription	Adipose Nuclei	Adipose
33	chr1:84356000-84356400	Strong transcription	HSMM	muscle
34	chr1:84356000-84380400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr1:84356200-84367000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr1:84356200-84367400	Weak transcription	HSMMtube	muscle

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