Variant report

Variant	rs72712841
Chromosome Location	chr9:16199008-16199009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10962326	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1108491	0.82[EUR][1000 genomes]
rs1332487	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1332488	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4422863	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4961668	0.82[EUR][1000 genomes]
rs4961669	0.84[ASN][1000 genomes]
rs7856829	0.87[EUR][1000 genomes]
rs883557	0.97[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892639	chr9:16190403-16242088	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16193600-16202000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16193600-16202200	Weak transcription	NHLF	lung
3	chr9:16193800-16202000	Weak transcription	A549	lung
4	chr9:16196000-16199800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr9:16196800-16202000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:16197000-16201400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:16197200-16201800	Weak transcription	NHDF-Ad	bronchial
8	chr9:16197400-16199400	Weak transcription	Aorta	Aorta
9	chr9:16197600-16202600	Weak transcription	Fetal Lung	lung
10	chr9:16197600-16207200	Weak transcription	Ovary	ovary
11	chr9:16198000-16202000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:16198200-16202000	Weak transcription	NH-A	brain
13	chr9:16198200-16202200	Weak transcription	Osteobl	bone
14	chr9:16198200-16203000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:16198400-16199600	Enhancers	Colon Smooth Muscle	Colon
16	chr9:16198400-16202000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr9:16198400-16202200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr9:16198400-16202800	Weak transcription	HSMM	muscle
19	chr9:16198800-16202000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:16198800-16202000	Weak transcription	HSMMtube	muscle
21	chr9:16198800-16202600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr9:16198800-16202800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr9:16198800-16203200	Weak transcription	Fetal Stomach	stomach
24	chr9:16199000-16199400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr9:16199000-16202000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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