Variant report

Variant	rs883557
Chromosome Location	chr9:16203740-16203741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:16201134..16203881-chr9:16231710..16234448,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10962326	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1108491	0.87[EUR][1000 genomes]
rs1332487	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1332488	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4422863	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4961668	0.87[EUR][1000 genomes]
rs4961669	0.89[ASN][1000 genomes]
rs72712841	0.97[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892639	chr9:16190403-16242088	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16197600-16207200	Weak transcription	Ovary	ovary
2	chr9:16201400-16204200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:16201800-16205800	Enhancers	NHDF-Ad	bronchial
4	chr9:16202000-16204400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:16202000-16204600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:16202000-16204600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:16202000-16205200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:16202000-16207200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:16202200-16204600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr9:16202200-16204600	Enhancers	NHLF	lung
11	chr9:16202200-16204600	Enhancers	Osteobl	bone
12	chr9:16202400-16204200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:16202600-16204000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:16202600-16204400	Enhancers	Fetal Lung	lung
15	chr9:16202600-16204600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:16202800-16203800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr9:16202800-16203800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr9:16202800-16203800	Flanking Active TSS	NH-A	brain
19	chr9:16202800-16204000	Enhancers	HMEC	breast
20	chr9:16202800-16204000	Enhancers	NHEK	skin
21	chr9:16202800-16204400	Enhancers	Colon Smooth Muscle	Colon
22	chr9:16202800-16204800	Enhancers	HSMM	muscle
23	chr9:16203000-16203800	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr9:16203000-16203800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:16203000-16203800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr9:16203000-16203800	Flanking Active TSS	Stomach Smooth Muscle	stomach
27	chr9:16203000-16204000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr9:16203000-16204000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr9:16203000-16204000	Flanking Active TSS	A549	lung
30	chr9:16203200-16203800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:16203200-16204200	Enhancers	Fetal Stomach	stomach
32	chr9:16203400-16203800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:16203400-16204000	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr9:16203400-16204400	Enhancers	Fetal Brain Male	brain
35	chr9:16203400-16204600	Enhancers	HSMMtube	muscle
36	chr9:16203400-16206200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr9:16203600-16204400	Bivalent Enhancer	Fetal Heart	heart
38	chr9:16203600-16204600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr9:16203600-16204600	Enhancers	Hela-S3	cervix
40	chr9:16203600-16207200	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr9:16203600-16213600	Weak transcription	Rectal Smooth Muscle	rectum

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