Variant report

Variant	rs72713164
Chromosome Location	chr8:124765148-124765149
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10089283	0.90[ASN][1000 genomes]
rs10106428	0.90[ASN][1000 genomes]
rs10505442	0.90[ASN][1000 genomes]
rs11987328	0.90[ASN][1000 genomes]
rs11991217	0.90[ASN][1000 genomes]
rs11997795	0.90[ASN][1000 genomes]
rs11998231	0.90[ASN][1000 genomes]
rs1367826	0.90[ASN][1000 genomes]
rs16898889	0.90[ASN][1000 genomes]
rs2272684	0.90[ASN][1000 genomes]
rs28412991	0.90[ASN][1000 genomes]
rs28589482	0.90[ASN][1000 genomes]
rs28701862	0.90[ASN][1000 genomes]
rs3889940	0.90[ASN][1000 genomes]
rs3889941	0.90[ASN][1000 genomes]
rs67260918	0.90[ASN][1000 genomes]
rs72713165	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72715027	0.90[ASN][1000 genomes]
rs72715028	0.90[ASN][1000 genomes]
rs72715029	0.90[ASN][1000 genomes]
rs72715030	0.90[ASN][1000 genomes]
rs72715031	0.90[ASN][1000 genomes]
rs72715032	0.90[ASN][1000 genomes]
rs72715037	0.90[ASN][1000 genomes]
rs72715039	0.90[ASN][1000 genomes]
rs72715041	0.90[ASN][1000 genomes]
rs72715042	0.90[ASN][1000 genomes]
rs72715045	0.90[ASN][1000 genomes]
rs72715049	0.90[ASN][1000 genomes]
rs72715051	0.90[ASN][1000 genomes]
rs72715053	0.90[ASN][1000 genomes]
rs72715055	0.90[ASN][1000 genomes]
rs72715056	0.90[ASN][1000 genomes]
rs72715057	0.90[ASN][1000 genomes]
rs72715061	0.90[ASN][1000 genomes]
rs72715064	0.90[ASN][1000 genomes]
rs72715069	0.90[ASN][1000 genomes]
rs9297677	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv6373	chr8:124741567-124786609	Active TSS Genic enhancers Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124760400-124766400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:124762000-124766400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:124762200-124775600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:124763200-124766400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:124763400-124766600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:124764200-124765600	Weak transcription	Fetal Intestine Small	intestine
7	chr8:124764800-124766400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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