Variant report

Variant	rs72717347
Chromosome Location	chr14:67683328-67683329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:67681892..67685441-chr14:67688163..67690297,3	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11539356	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103876	0.90[EUR][1000 genomes]
rs17103910	0.90[EUR][1000 genomes]
rs1813	0.95[EUR][1000 genomes]
rs3752992	0.90[EUR][1000 genomes]
rs41285536	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs45479091	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45561936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58979599	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715314	0.90[EUR][1000 genomes]
rs72715333	0.90[EUR][1000 genomes]
rs72715334	0.90[EUR][1000 genomes]
rs72715347	0.90[EUR][1000 genomes]
rs72715348	0.90[EUR][1000 genomes]
rs72715349	0.90[EUR][1000 genomes]
rs72715354	0.90[EUR][1000 genomes]
rs72715355	0.90[EUR][1000 genomes]
rs72715361	0.90[EUR][1000 genomes]
rs72715389	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72717319	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72717359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717370	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717375	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717376	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717379	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717381	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717382	0.95[EUR][1000 genomes]
rs72717383	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717385	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717386	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717387	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717389	1.00[EUR][1000 genomes]
rs72717391	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717392	1.00[EUR][1000 genomes]
rs72717393	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717397	1.00[EUR][1000 genomes]
rs72717398	1.00[EUR][1000 genomes]
rs72717399	1.00[EUR][1000 genomes]
rs72717401	1.00[EUR][1000 genomes]
rs72719106	1.00[EUR][1000 genomes]
rs72719108	1.00[EUR][1000 genomes]
rs72719110	1.00[EUR][1000 genomes]
rs72719111	1.00[EUR][1000 genomes]
rs72719115	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719116	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719118	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719122	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719125	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719127	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719128	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902058	chr14:67310195-67760538	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv902059	chr14:67352226-67760538	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv2751285	chr14:67364747-67886781	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv902060	chr14:67417083-67760538	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1045518	chr14:67529049-67959582	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv832821	chr14:67590418-67828169	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv1040257	chr14:67634585-67762806	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67683200-67687000	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links