Variant report

Variant	rs72717359
Chromosome Location	chr14:67713775-67713776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:67707264..67709261-chr14:67712534..67714050,2	MCF-7	breast:
2	chr14:67705323..67710204-chr14:67712445..67718210,9	MCF-7	breast:
3	chr14:67712988..67715259-chr14:67715330..67718013,2	K562	blood:

Variant related genes	Relation type
ENSG00000072415	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11539356	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17103876	0.90[EUR][1000 genomes]
rs17103910	0.90[EUR][1000 genomes]
rs1813	0.95[EUR][1000 genomes]
rs3752992	0.90[EUR][1000 genomes]
rs41285536	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs45479091	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45561936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58979599	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72715314	0.90[EUR][1000 genomes]
rs72715333	0.90[EUR][1000 genomes]
rs72715334	0.90[EUR][1000 genomes]
rs72715347	0.90[EUR][1000 genomes]
rs72715348	0.90[EUR][1000 genomes]
rs72715349	0.90[EUR][1000 genomes]
rs72715354	0.90[EUR][1000 genomes]
rs72715355	0.90[EUR][1000 genomes]
rs72715361	0.90[EUR][1000 genomes]
rs72715389	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72717319	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72717347	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717370	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717375	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717376	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717379	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717381	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717382	0.95[EUR][1000 genomes]
rs72717383	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717385	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72717386	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717387	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717389	1.00[EUR][1000 genomes]
rs72717391	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717392	1.00[EUR][1000 genomes]
rs72717393	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72717397	1.00[EUR][1000 genomes]
rs72717398	1.00[EUR][1000 genomes]
rs72717399	1.00[EUR][1000 genomes]
rs72717401	1.00[EUR][1000 genomes]
rs72719106	1.00[EUR][1000 genomes]
rs72719108	1.00[EUR][1000 genomes]
rs72719110	1.00[EUR][1000 genomes]
rs72719111	1.00[EUR][1000 genomes]
rs72719115	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719116	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719118	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719122	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719125	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719127	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719128	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902058	chr14:67310195-67760538	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv902059	chr14:67352226-67760538	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv2751285	chr14:67364747-67886781	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv902060	chr14:67417083-67760538	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1045518	chr14:67529049-67959582	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv832821	chr14:67590418-67828169	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv1040257	chr14:67634585-67762806	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67708800-67714200	Weak transcription	Small Intestine	intestine
2	chr14:67708800-67718000	Weak transcription	Pancreas	Pancrea
3	chr14:67708800-67730600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:67709000-67715400	Weak transcription	Ovary	ovary
5	chr14:67709000-67740600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr14:67709200-67714200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr14:67709200-67718000	Weak transcription	Right Ventricle	heart
8	chr14:67709400-67714600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr14:67709400-67717200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr14:67709400-67730000	Weak transcription	Fetal Stomach	stomach
11	chr14:67709600-67713800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr14:67709600-67714200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr14:67709600-67718000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:67709600-67719200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr14:67709600-67720200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr14:67709800-67714000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr14:67709800-67714000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr14:67709800-67714000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr14:67709800-67714000	Weak transcription	Osteobl	bone
20	chr14:67709800-67714200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:67709800-67714200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr14:67709800-67714200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr14:67709800-67714200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr14:67709800-67714200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr14:67709800-67714200	Weak transcription	HSMMtube	muscle
26	chr14:67709800-67714200	Weak transcription	NH-A	brain
27	chr14:67709800-67714200	Weak transcription	NHDF-Ad	bronchial
28	chr14:67709800-67714400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr14:67709800-67714600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr14:67709800-67716000	Weak transcription	Brain Anterior Caudate	brain
31	chr14:67709800-67716600	Weak transcription	Brain Hippocampus Middle	brain
32	chr14:67709800-67716600	Weak transcription	Fetal Kidney	kidney
33	chr14:67709800-67718000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr14:67709800-67718200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr14:67709800-67718200	Weak transcription	Brain Angular Gyrus	brain
36	chr14:67709800-67719200	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr14:67709800-67733600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr14:67709800-67737800	Weak transcription	Primary T cells from cord blood	blood
39	chr14:67709800-67746000	Weak transcription	Primary B cells from cord blood	blood
40	chr14:67710000-67713800	Weak transcription	NHLF	lung
41	chr14:67710000-67714000	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr14:67710000-67714200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr14:67710000-67714200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr14:67710000-67714200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr14:67710000-67714200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr14:67710000-67718000	Weak transcription	Fetal Intestine Large	intestine
47	chr14:67710200-67728400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr14:67710600-67735000	Weak transcription	Placenta	Placenta
49	chr14:67710800-67714200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr14:67710800-67714200	Weak transcription	Duodenum Mucosa	Duodenum

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