Variant report

Variant	rs72718921
Chromosome Location	chr15:31567579-31567580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55783968	1.00[AMR][1000 genomes]
rs72714651	1.00[AMR][1000 genomes]
rs72716596	1.00[AMR][1000 genomes]
rs72722811	1.00[AMR][1000 genomes]
rs72722833	1.00[AMR][1000 genomes]
rs72724939	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
5	nsv1052722	chr15:31261834-31609680	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	nsv542315	chr15:31261834-31609680	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
8	nsv903838	chr15:31452911-31672128	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
10	nsv903839	chr15:31495113-31576677	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
11	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
12	nsv456747	chr15:31537496-31637996	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv568772	chr15:31537496-31637996	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31550600-31567600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:31556600-31568200	Enhancers	Placenta	Placenta
3	chr15:31556800-31567600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:31559000-31570200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:31559400-31568200	Enhancers	Fetal Thymus	thymus
6	chr15:31561600-31572000	Weak transcription	Right Atrium	heart
7	chr15:31562400-31570800	Enhancers	Fetal Muscle Trunk	muscle
8	chr15:31562600-31567800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:31562800-31567800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:31563000-31568200	Enhancers	Lung	lung
11	chr15:31563200-31572600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:31563600-31573400	Enhancers	Fetal Muscle Leg	muscle
13	chr15:31564000-31567600	Enhancers	Primary hematopoietic stem cells	blood
14	chr15:31564000-31567800	Enhancers	Gastric	stomach
15	chr15:31565000-31567600	Enhancers	HepG2	liver
16	chr15:31565200-31567800	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr15:31565400-31567800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr15:31565400-31573000	Enhancers	Brain Hippocampus Middle	brain
19	chr15:31565600-31567600	Enhancers	HSMM	muscle
20	chr15:31565600-31568000	Enhancers	HSMMtube	muscle
21	chr15:31565800-31568000	Weak transcription	Fetal Brain Male	brain
22	chr15:31565800-31572000	Enhancers	Brain Cingulate Gyrus	brain
23	chr15:31565800-31574000	Enhancers	Brain Anterior Caudate	brain
24	chr15:31565800-31575000	Enhancers	Brain Substantia Nigra	brain
25	chr15:31566000-31567600	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr15:31566200-31570200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr15:31566600-31567600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr15:31566600-31567600	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr15:31566600-31567600	Enhancers	Fetal Intestine Small	intestine
30	chr15:31566600-31568400	Enhancers	Spleen	Spleen
31	chr15:31566800-31567600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:31566800-31567600	Enhancers	Duodenum Mucosa	Duodenum
33	chr15:31566800-31567600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
34	chr15:31566800-31567600	Enhancers	Fetal Intestine Large	intestine
35	chr15:31566800-31567600	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr15:31566800-31567600	Enhancers	Thymus	Thymus
37	chr15:31566800-31567600	Enhancers	Dnd41	blood
38	chr15:31566800-31567800	Enhancers	Left Ventricle	heart
39	chr15:31566800-31568000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr15:31566800-31568200	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr15:31566800-31568600	Enhancers	Brain Germinal Matrix	brain
42	chr15:31566800-31569200	Enhancers	Brain Angular Gyrus	brain
43	chr15:31567000-31567800	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr15:31567000-31568000	Enhancers	Fetal Heart	heart
45	chr15:31567000-31568000	Bivalent Enhancer	Fetal Stomach	stomach
46	chr15:31567000-31568600	Enhancers	Right Ventricle	heart
47	chr15:31567000-31571000	Weak transcription	Liver	Liver
48	chr15:31567000-31571200	Weak transcription	Esophagus	oesophagus
49	chr15:31567200-31567600	Enhancers	Muscle Satellite Cultured Cells	--
50	chr15:31567200-31568000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin

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