Variant report

Variant	rs55783968
Chromosome Location	chr15:31531184-31531185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs72714651	1.00[AMR][1000 genomes]
rs72716596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718921	1.00[AMR][1000 genomes]
rs72722811	1.00[AMR][1000 genomes]
rs72722833	1.00[AMR][1000 genomes]
rs8029583	0.82[EUR][1000 genomes]
rs8035866	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
5	nsv1036018	chr15:31140415-31544888	Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
6	nsv1052722	chr15:31261834-31609680	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv542315	chr15:31261834-31609680	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
9	nsv903838	chr15:31452911-31672128	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
11	nsv903839	chr15:31495113-31576677	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31518400-31540600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:31520800-31533600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:31524200-31533400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:31525200-31532000	Enhancers	Fetal Thymus	thymus
5	chr15:31527000-31532200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr15:31527400-31532200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr15:31528600-31531800	Enhancers	Fetal Heart	heart
8	chr15:31529400-31531200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr15:31529600-31531200	Weak transcription	Colon Smooth Muscle	Colon
10	chr15:31529600-31531200	Weak transcription	Thymus	Thymus
11	chr15:31529600-31540400	Weak transcription	Spleen	Spleen
12	chr15:31529800-31531200	Weak transcription	Fetal Intestine Small	intestine
13	chr15:31529800-31531200	Weak transcription	Placenta	Placenta
14	chr15:31529800-31531200	Weak transcription	Left Ventricle	heart
15	chr15:31529800-31531200	Weak transcription	Right Ventricle	heart
16	chr15:31529800-31533400	Weak transcription	Fetal Muscle Leg	muscle
17	chr15:31530000-31531400	Weak transcription	Fetal Stomach	stomach
18	chr15:31530600-31532000	Enhancers	Primary T cells from cord blood	blood
19	chr15:31530600-31532200	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr15:31530600-31532200	Enhancers	Primary B cells from cord blood	blood
21	chr15:31530600-31532200	Enhancers	Primary B cells from peripheral blood	blood
22	chr15:31530600-31532200	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr15:31530600-31532200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr15:31530800-31531600	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr15:31530800-31532000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr15:31530800-31532000	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr15:31530800-31532200	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr15:31531000-31532000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr15:31531000-31532000	Enhancers	GM12878-XiMat	blood
30	chr15:31531000-31532200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:31531000-31532200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr15:31531000-31534800	Enhancers	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links