Variant report

Variant	rs8029583
Chromosome Location	chr15:31508771-31508772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:31507074..31509248-chr15:31619187..31621529,2	MCF-7	breast:
2	chr15:31507734..31509504-chr15:31521434..31524217,2	MCF-7	breast:
3	chr11:16759668..16760532-chr15:31508179..31508998,2	Hela-S3	cervix:
4	chr1:153507668..153508950-chr15:31508416..31509240,3	Hela-S3	cervix:
5	chr15:31508421..31508950-chr4:48343295..48344015,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000109171	Chromatin interaction
ENSG00000110696	Chromatin interaction
ENSG00000110693	Chromatin interaction
ENSG00000169926	Chromatin interaction
ENSG00000259772	Chromatin interaction
ENSG00000197956	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55783968	0.82[EUR][1000 genomes]
rs72716596	0.82[EUR][1000 genomes]
rs8035866	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
5	nsv1036018	chr15:31140415-31544888	Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
6	nsv1052722	chr15:31261834-31609680	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv542315	chr15:31261834-31609680	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
9	nsv903836	chr15:31330280-31512652	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
10	nsv903838	chr15:31452911-31672128	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
12	nsv903839	chr15:31495113-31576677	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
13	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
14	esv3389877	chr15:31506685-31509233	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31506600-31509400	Enhancers	Fetal Heart	heart
2	chr15:31506800-31509200	Enhancers	Fetal Brain Male	brain
3	chr15:31507000-31509000	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr15:31507400-31508800	Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr15:31507400-31508800	Active TSS	Rectal Smooth Muscle	rectum
6	chr15:31507400-31508800	Flanking Active TSS	Dnd41	blood
7	chr15:31507400-31509200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr15:31507600-31508800	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr15:31507600-31508800	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr15:31507600-31508800	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr15:31507600-31508800	Active TSS	Brain Anterior Caudate	brain
12	chr15:31507600-31508800	Active TSS	Hela-S3	cervix
13	chr15:31507600-31508800	Active TSS	HepG2	liver
14	chr15:31507600-31509000	Active TSS	H9 Cell Line	embryonic stem cell
15	chr15:31507600-31509000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:31507600-31509000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
17	chr15:31507600-31509200	Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr15:31507600-31509400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr15:31507800-31508800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr15:31507800-31508800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:31507800-31508800	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:31507800-31508800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr15:31507800-31508800	Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr15:31507800-31508800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:31507800-31508800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr15:31507800-31508800	Active TSS	Brain Angular Gyrus	brain
27	chr15:31507800-31508800	Active TSS	Brain Hippocampus Middle	brain
28	chr15:31507800-31508800	Active TSS	Brain Substantia Nigra	brain
29	chr15:31507800-31508800	Active TSS	Colon Smooth Muscle	Colon
30	chr15:31507800-31508800	Active TSS	Esophagus	oesophagus
31	chr15:31507800-31508800	Active TSS	Fetal Intestine Large	intestine
32	chr15:31507800-31508800	Active TSS	Fetal Intestine Small	intestine
33	chr15:31507800-31508800	Active TSS	Left Ventricle	heart
34	chr15:31507800-31508800	Active TSS	Lung	lung
35	chr15:31507800-31508800	Active TSS	Psoas Muscle	Psoas
36	chr15:31507800-31508800	Active TSS	Rectal Mucosa Donor 29	rectum
37	chr15:31507800-31508800	Active TSS	Rectal Mucosa Donor 31	rectum
38	chr15:31507800-31508800	Active TSS	Right Atrium	heart
39	chr15:31507800-31508800	Active TSS	Right Ventricle	heart
40	chr15:31507800-31508800	Active TSS	Thymus	Thymus
41	chr15:31507800-31508800	Active TSS	Spleen	Spleen
42	chr15:31507800-31508800	Active TSS	GM12878-XiMat	blood
43	chr15:31507800-31508800	Active TSS	NH-A	brain
44	chr15:31507800-31508800	Active TSS	NHDF-Ad	bronchial
45	chr15:31507800-31509000	Active TSS	ES-I3 Cell Line	embryonic stem cell
46	chr15:31507800-31509000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr15:31507800-31509000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr15:31507800-31509000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr15:31507800-31509000	Active TSS	Brain Germinal Matrix	brain
50	chr15:31507800-31509000	Active TSS	A549	lung

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