Variant report

Variant	rs72721182
Chromosome Location	chr1:172258325-172258326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172256870..172259800-chr1:172260361..172262827,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C1orf105-2	chr1:172258270-172258401	NONHSAT007606

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10489289	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10489290	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10489291	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10489292	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10752914	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10797881	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10797902	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10911323	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10911326	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10911335	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10911336	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10911338	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10911349	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10911356	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10911394	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10911433	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10911504	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11583757	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12063247	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12073843	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12075079	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12081408	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12082431	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12402454	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12402792	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12403844	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12404267	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12404363	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12404490	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12407453	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12409279	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12410143	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12410416	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12411264	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12563643	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12567175	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1317394	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16844126	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16844128	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16844133	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16844134	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16844255	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2289635	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2421994	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2422074	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2422075	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3850639	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3850640	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3895277	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4072117	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41516352	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4382763	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4484957	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55656112	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56682471	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60866522	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6676836	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6678749	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6686115	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6686118	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6701414	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs678962	0.88[EUR][1000 genomes]
rs72721163	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72721197	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72723204	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006542	chr1:172253765-172304690	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172239000-172262000	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:172254800-172258400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:172256200-172267400	Weak transcription	Left Ventricle	heart
4	chr1:172256200-172267400	Weak transcription	Psoas Muscle	Psoas
5	chr1:172256200-172290000	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:172256400-172258400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:172256400-172262000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:172256400-172290200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:172256600-172262000	Weak transcription	Ovary	ovary
10	chr1:172256600-172265200	Weak transcription	NH-A	brain
11	chr1:172256600-172289800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr1:172256800-172262200	Weak transcription	Adipose Nuclei	Adipose
13	chr1:172257200-172261800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:172257200-172262000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:172257200-172262200	Weak transcription	Osteobl	bone
16	chr1:172257600-172262000	Weak transcription	NHLF	lung
17	chr1:172257600-172267400	Weak transcription	Pancreas	Pancrea
18	chr1:172257800-172258600	Enhancers	Fetal Heart	heart
19	chr1:172258000-172262000	Weak transcription	Fetal Lung	lung
20	chr1:172258000-172262000	Weak transcription	NHDF-Ad	bronchial

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