Variant report

Variant	rs72721197
Chromosome Location	chr1:172271162-172271163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10489289	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10489290	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10489291	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10489292	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10752914	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10797881	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10797902	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10911323	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10911326	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10911335	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10911336	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10911338	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10911349	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10911356	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10911394	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10911433	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10911504	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11583757	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12063247	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12073843	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12075079	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12081408	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12082431	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12402454	0.90[EUR][1000 genomes]
rs12402792	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12403844	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12404267	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12404363	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12404490	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12407453	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12409279	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12410143	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12410416	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12411264	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12563643	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12567175	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1317394	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16844126	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16844128	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16844133	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16844134	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16844255	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289635	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2421994	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422074	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2422075	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3850639	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3850640	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3895277	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4072117	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41516352	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4382763	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4484957	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55656112	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56682471	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60866522	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6676836	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6678749	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6686115	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6686118	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6701414	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs678962	0.87[EUR][1000 genomes]
rs72721163	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72721182	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72723204	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006542	chr1:172253765-172304690	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172256200-172290000	Weak transcription	Brain Hippocampus Middle	brain
2	chr1:172256400-172290200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:172256600-172289800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:172267800-172271400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:172267800-172272800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr1:172269000-172273200	Weak transcription	Brain Angular Gyrus	brain
7	chr1:172271000-172271800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:172271000-172271800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:172271000-172271800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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