Variant report

Variant	rs72722825
Chromosome Location	chr1:173091692-173091693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56072625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72722812	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72722821	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72722823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72722827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173086600-173091800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:173087600-173092600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:173088800-173091800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr1:173089800-173091800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:173090000-173091800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:173090600-173092000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:173090800-173091800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:173090800-173091800	Weak transcription	Placenta	Placenta
9	chr1:173090800-173092000	Enhancers	Fetal Kidney	kidney
10	chr1:173091000-173091800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:173091000-173091800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:173091000-173091800	Enhancers	HSMM	muscle
13	chr1:173091000-173092000	Enhancers	Fetal Intestine Large	intestine
14	chr1:173091000-173092000	Enhancers	Stomach Mucosa	stomach
15	chr1:173091000-173092000	Enhancers	HepG2	liver
16	chr1:173091000-173092000	Enhancers	HUVEC	blood vessel
17	chr1:173091000-173092400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr1:173091000-173093000	Enhancers	Fetal Stomach	stomach
19	chr1:173091200-173091800	Enhancers	Adipose Nuclei	Adipose
20	chr1:173091200-173091800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr1:173091200-173091800	Enhancers	Hela-S3	cervix
22	chr1:173091200-173091800	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr1:173091200-173092200	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr1:173091200-173092200	Enhancers	Liver	Liver
25	chr1:173091200-173092200	Enhancers	Fetal Intestine Small	intestine
26	chr1:173091200-173092200	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr1:173091400-173091800	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr1:173091400-173091800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr1:173091400-173091800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr1:173091400-173091800	Enhancers	Muscle Satellite Cultured Cells	--
31	chr1:173091400-173091800	Enhancers	Colon Smooth Muscle	Colon
32	chr1:173091400-173091800	Enhancers	Duodenum Mucosa	Duodenum
33	chr1:173091400-173091800	Enhancers	Rectal Smooth Muscle	rectum
34	chr1:173091400-173091800	Enhancers	Osteobl	bone
35	chr1:173091400-173092000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr1:173091400-173092000	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr1:173091400-173092000	Enhancers	NHEK	skin
38	chr1:173091400-173092200	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr1:173091400-173092200	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr1:173091400-173092200	Enhancers	A549	lung
41	chr1:173091400-173092600	Enhancers	Fetal Heart	heart
42	chr1:173091400-173096400	Weak transcription	Small Intestine	intestine
43	chr1:173091600-173091800	Enhancers	Primary hematopoietic stem cells	blood
44	chr1:173091600-173091800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr1:173091600-173091800	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr1:173091600-173091800	Enhancers	HSMMtube	muscle
47	chr1:173091600-173091800	Enhancers	NH-A	brain
48	chr1:173091600-173092000	Enhancers	Stomach Smooth Muscle	stomach
49	chr1:173091600-173092000	Enhancers	HMEC	breast
50	chr1:173091600-173092200	Enhancers	HUES48 Cell Line	embryonic stem cell

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