Variant report

Variant	rs72722827
Chromosome Location	chr1:173093220-173093221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173087455..173089707-chr1:173091714..173094259,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56072625	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72722812	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72722821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72722823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72722825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173091400-173096400	Weak transcription	Small Intestine	intestine
2	chr1:173092400-173093800	Enhancers	Fetal Brain Female	brain
3	chr1:173092600-173093800	Enhancers	Fetal Intestine Small	intestine
4	chr1:173092600-173093800	Enhancers	Stomach Mucosa	stomach
5	chr1:173092800-173093400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr1:173092800-173093400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:173092800-173093400	Enhancers	Colon Smooth Muscle	Colon
8	chr1:173092800-173094600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:173092800-173096400	Enhancers	Liver	Liver
10	chr1:173092800-173097800	Weak transcription	Pancreas	Pancrea
11	chr1:173093000-173095200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr1:173093000-173095600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr1:173093000-173096400	Enhancers	HepG2	liver
14	chr1:173093000-173096600	Weak transcription	A549	lung
15	chr1:173093000-173097400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr1:173093000-173097400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr1:173093000-173097800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:173093000-173097800	Weak transcription	HMEC	breast
19	chr1:173093000-173101600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr1:173093000-173106600	Weak transcription	HSMMtube	muscle
21	chr1:173093200-173096200	Weak transcription	Fetal Intestine Large	intestine
22	chr1:173093200-173097600	Weak transcription	NHEK	skin
23	chr1:173093200-173097800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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