Variant report

Variant	rs72725112
Chromosome Location	chr14:68315614-68315615
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68314860..68317034-chr14:68333283..68336153,3	MCF-7	breast:
2	chr14:68315532..68317270-chr14:68325905..68327762,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1033686	0.81[EUR][1000 genomes]
rs11621682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11626809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12878157	1.00[AFR][1000 genomes]
rs34612763	1.00[AFR][1000 genomes]
rs72725106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1054697	chr14:68202004-68345982	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68287600-68317800	Weak transcription	Spleen	Spleen
2	chr14:68287800-68318200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr14:68294200-68316600	Weak transcription	Placenta	Placenta
4	chr14:68294600-68318200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr14:68300600-68336200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:68303200-68318200	Weak transcription	Ovary	ovary
7	chr14:68303200-68331800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr14:68311000-68316000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:68311400-68325800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:68312800-68315800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
11	chr14:68313200-68318000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr14:68313200-68324400	Weak transcription	Gastric	stomach
13	chr14:68313200-68326400	Weak transcription	Pancreas	Pancrea
14	chr14:68313200-68333400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr14:68313200-68333800	Weak transcription	Primary T cells from cord blood	blood
16	chr14:68313400-68322200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:68313800-68320600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr14:68313800-68324600	Weak transcription	Esophagus	oesophagus
19	chr14:68314000-68331400	Weak transcription	Dnd41	blood
20	chr14:68315000-68315800	ZNF genes & repeats	Primary B cells from cord blood	blood
21	chr14:68315200-68317800	Weak transcription	Thymus	Thymus
22	chr14:68315400-68316200	Weak transcription	Stomach Smooth Muscle	stomach

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